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https://github.com/MillironX/nf-core_modules.git
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c3bacb9fdd
* Add deeparg download data * Tweak downloaddata test.yml * Add deeparg tests * Apply suggestions from code review * Fix output file paths in test * Fix tests again md5sum to string
19 lines
537 B
Text
19 lines
537 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { DEEPARG_DOWNLOADDATA } from '../../../../modules/deeparg/downloaddata/main.nf'
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include { DEEPARG_PREDICT } from '../../../../modules/deeparg/predict/main.nf'
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workflow test_deeparg_predict {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['bacteroides_fragilis']['genome']['genome_fna_gz'], checkIfExists: true),
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'LS'
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]
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DEEPARG_DOWNLOADDATA()
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DEEPARG_PREDICT ( input, DEEPARG_DOWNLOADDATA.out.db )
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}
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