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https://github.com/MillironX/nf-core_modules.git
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967fb22ded
* Update versions * update checksums + remove variables as input for applyvqsr * sneak in removal of values and provide them via modules.config * update another checksum * more checksums * move vairable to config * remove controlfreec, wrong branch * add line break
11 lines
381 B
Text
11 lines
381 B
Text
process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName: GATK4_APPLYVQSR_NO_ALLELSPECIFICITY {
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ext.args = '--mode SNP --truth-sensitivity-filter-level 99.0'
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}
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withName: GATK4_APPLYVQSR_WITH_ALLELSPECIFICITY {
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ext.args = '--mode SNP --truth-sensitivity-filter-level 99.0 -AS'
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}
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}
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