mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 19:48:16 +00:00
60 lines
2 KiB
YAML
60 lines
2 KiB
YAML
name: MultiQC
|
|
description: Aggregate results from bioinformatics analyses across many samples into a single report
|
|
keywords:
|
|
- QC
|
|
- bioinformatics tools
|
|
- Beautiful stand-alone HTML report
|
|
tools:
|
|
- multiqc:
|
|
description: |
|
|
MultiQC searches a given directory for analysis logs and compiles a HTML report.
|
|
It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.
|
|
homepage: https://multiqc.info/
|
|
documentation: https://multiqc.info/docs/
|
|
params:
|
|
- outdir:
|
|
type: string
|
|
description: |
|
|
The pipeline's output directory. By default, the module will
|
|
output files into `$params.outdir/<SOFTWARE>`
|
|
- publish_dir_mode:
|
|
type: string
|
|
description: |
|
|
Value for the Nextflow `publishDir` mode parameter.
|
|
Available: symlink, rellink, link, copy, copyNoFollow, move.
|
|
- enable_conda:
|
|
type: boolean
|
|
description: |
|
|
Run the module with Conda using the software specified
|
|
via the `conda` directive
|
|
- singularity_pull_docker_container:
|
|
type: boolean
|
|
description: |
|
|
Instead of directly downloading Singularity images for use with Singularity,
|
|
force the workflow to pull and convert Docker containers instead.
|
|
input:
|
|
- multiqc_files:
|
|
type: file
|
|
description: |
|
|
List of reports / files recognised by MultiQC, for example the html and zip output of FastQC
|
|
output:
|
|
- report:
|
|
type: file
|
|
description: MultiQC report file
|
|
pattern: "multiqc_report.html"
|
|
- data:
|
|
type: dir
|
|
description: MultiQC data dir
|
|
pattern: "multiqc_data"
|
|
- plots:
|
|
type: file
|
|
description: Plots created by MultiQC
|
|
pattern: "*_data"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
authors:
|
|
- "@abhi18av"
|
|
- "@bunop"
|
|
- "@drpatelh"
|