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21 lines
644 B
Text
Executable file
21 lines
644 B
Text
Executable file
#!/usr/bin/env nextflow
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nextflow.preview.dsl = 2
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params.outdir = "." // gets set in nextflow.config file (as './results/fastqc')
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params.fastqc_args = ''
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params.verbose = false
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// TODO: check the output files in some way
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// include '../../../nf-core/module_testing/check_process_outputs.nf'
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include '../main.nf'
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// Define input channels
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ch_read_files = Channel
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.fromFilePairs('../../../test-datasets/test*{1,2}.fastq.gz',size:-1)
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// .view() // to check whether the input channel works
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// Run the workflow
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workflow {
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FASTQC (ch_read_files, params.outdir, params.fastqc_args, params.verbose)
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// .check_output()
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}
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