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22 lines
765 B
Text
22 lines
765 B
Text
#!/usr/bin/env nextflow
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nextflow.preview.dsl = 2
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include '../../../nf-core/module_testing/check_process_outputs.nf' params(params)
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include '../main.nf' params(params)
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// Define input channels
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readPaths = [
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['SRR4238351', ['../../../test-datasets/tools/fastqc/input/SRR4238351_subsamp.fastq.gz']],
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['SRR4238355', ['../../../test-datasets/tools/fastqc/input/SRR4238355_subsamp.fastq.gz']],
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['SRR4238359', ['../../../test-datasets/tools/fastqc/input/SRR4238359_subsamp.fastq.gz']],
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['SRR4238379', ['../../../test-datasets/tools/fastqc/input/SRR4238379_subsamp.fastq.gz']]
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]
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Channel
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.from(readPaths)
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.map { row -> [ row[0], [ file(row[1][0]) ] ] }
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.set { ch_read_files }
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// Run the workflow
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workflow {
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fastqc(ch_read_files)
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// .check_output()
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}
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