mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
4575e5455c
* New last/split module to find split alignments. The `last-split` tool distributed with [LAST](https://gitlab.com/mcfrith/last) finds split or spliced alignments in a MAF file that is produced with, for example, LAST `lastal` command. This new module is part of the work discribed in Issue #464. During this development, we fix the versiob of LAST to 1219 to ensure consistency. We will upgrade it later. * Update software/last/split/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
13 lines
381 B
Text
13 lines
381 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { LAST_SPLIT } from '../../../../software/last/split/main.nf' addParams( options: ['suffix':'.split'] )
|
|
|
|
workflow test_last_split {
|
|
|
|
input = [ [ id:'contigs.genome' ], // meta map
|
|
file(params.test_data['sarscov2']['genome']['contigs_genome_maf_gz'], checkIfExists: true) ]
|
|
|
|
LAST_SPLIT ( input )
|
|
}
|