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43 lines
1.3 KiB
YAML
43 lines
1.3 KiB
YAML
name: Trim Galore!
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description: Trim FastQ files using Trim Galore!
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keywords:
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- trimming
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- adapters
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- sequencing adapters
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tools:
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- fastqc:
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description: |
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A wrapper tool around Cutadapt and FastQC to consistently apply quality
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and adapter trimming to FastQ files, with some extra functionality for
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MspI-digested RRBS-type (Reduced Representation Bisufite-Seq) libraries.
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homepage: https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/
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documentation: https://github.com/FelixKrueger/TrimGalore/blob/master/Docs/Trim_Galore_User_Guide.md
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input:
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-
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- sample_id:
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type: string
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description: Sample identifier
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- reads:
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type: file
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description: Input FastQ file, or pair of files
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output:
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-
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- sample_id:
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type: string
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description: Sample identifier
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- trimmed_fastq:
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type: file
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description: Trimmed FastQ files
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pattern: *fq.gz
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-
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- report:
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type: file
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description: Trim Galore! trimming report
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pattern: *trimming_report.txt
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-
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- fastqc_report:
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type: file
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description: FastQC report
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pattern: *_fastqc.{zip,html}
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authors:
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- @ewels
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