mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 19:48:16 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
44 lines
1.2 KiB
YAML
44 lines
1.2 KiB
YAML
name: mash_sketch
|
|
description: Creates vastly reduced representations of sequences using MinHash
|
|
keywords:
|
|
- mash/sketch
|
|
tools:
|
|
- mash:
|
|
description: Fast sequence distance estimator that uses MinHash
|
|
homepage: https://github.com/marbl/Mash
|
|
documentation: https://mash.readthedocs.io/en/latest/sketches.html
|
|
tool_dev_url: https://github.com/marbl/Mash
|
|
doi: "10.1186/s13059-016-0997-x"
|
|
licence: ["https://github.com/marbl/Mash/blob/master/LICENSE.txt"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- reads:
|
|
type: file
|
|
description: List of input paired-end FastQ files
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- mash:
|
|
type: file
|
|
description: Sketch output
|
|
pattern: "*.{mash}"
|
|
- stats:
|
|
type: file
|
|
description: Sketch statistics
|
|
pattern: "*.{mash_stats}"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
|
|
authors:
|
|
- "@thanhleviet"
|