mirror of
https://github.com/MillironX/nf-core_modules.git
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52 lines
1.4 KiB
YAML
52 lines
1.4 KiB
YAML
name: bowtie_align
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on:
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push:
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paths:
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- software/bowtie/align/**
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- software/bowtie/index/**
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- .github/workflows/bowtie_align.yml
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- tests/software/bowtie/**
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pull_request:
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paths:
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- software/bowtie/align/**
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- software/bowtie/index/**
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- .github/workflows/bowtie_align.yml
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- tests/software/bowtie/**
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jobs:
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ci_test:
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runs-on: ubuntu-latest
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strategy:
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matrix:
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nxf_version: [20.11.0-edge]
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env:
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NXF_ANSI_LOG: false
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steps:
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- uses: actions/checkout@v2
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- name: Install Nextflow
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env:
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NXF_VER: ${{ matrix.nxf_version }}
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run: |
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wget -qO- get.nextflow.io | bash
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sudo mv nextflow /usr/local/bin/
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- name: Set up Python
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uses: actions/setup-python@v2
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with:
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python-version: "3.x"
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- name: Install dependencies
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run: python -m pip install --upgrade pip pytest-workflow
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# Test the module
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- run: pytest --kwdof --tag bowtie_align --symlink --wt 2
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- name: Upload logs on failure
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if: ${{ failure() }}
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uses: actions/upload-artifact@v2
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with:
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name: logs
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path: |
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/tmp/pytest_workflow_*/*/.nextflow.log
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/tmp/pytest_workflow_*/*/log.out
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/tmp/pytest_workflow_*/*/log.err
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