mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
60c65fb386
* Add ultra/index and ultra/align modules * Correct tag and prefix * Fix typos * Remove SAMTOOLS SORT from test * Update: Convert sam to bam * Add tag to docker image * Fix typo * Add args2 for samtools
44 lines
1.2 KiB
YAML
44 lines
1.2 KiB
YAML
name: "ultra_index"
|
|
description: uLTRA aligner - A wrapper around minimap2 to improve small exon detection - Index gtf file for reads alignment
|
|
keywords:
|
|
- uLTRA
|
|
- index
|
|
- minimap2
|
|
- long_read
|
|
- isoseq
|
|
- ont
|
|
tools:
|
|
- "ultra":
|
|
description: "Splice aligner of long transcriptomic reads to genome."
|
|
homepage: "https://github.com/ksahlin/uLTRA"
|
|
documentation: "https://github.com/ksahlin/uLTRA"
|
|
tool_dev_url: "https://github.com/ksahlin/uLTRA"
|
|
doi: "10.1093/bioinformatics/btab540"
|
|
licence: "['GNU GPLV3']"
|
|
|
|
input:
|
|
- fasta:
|
|
type: file
|
|
description: A fasta file of the genome to use as reference for mapping
|
|
pattern: "*.{fasta, fa}"
|
|
- gtf:
|
|
type: file
|
|
description: An annotation file of the reference genome in GTF format
|
|
pattern: "*.gtf"
|
|
|
|
output:
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- pickle:
|
|
type: file
|
|
description: Index files generated by uLTRA index
|
|
pattern: "*.pickle"
|
|
- pickle:
|
|
type: file
|
|
description: database file generated by uLTRA index
|
|
pattern: "*.db"
|
|
|
|
authors:
|
|
- "@sguizard"
|