mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 19:48:16 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
47 lines
1.5 KiB
YAML
47 lines
1.5 KiB
YAML
name: bedtools_intersect
|
|
description: Allows one to screen for overlaps between two sets of genomic features.
|
|
keywords:
|
|
- bed
|
|
- intersect
|
|
tools:
|
|
- bedtools:
|
|
description: |
|
|
A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
|
|
documentation: https://bedtools.readthedocs.io/en/latest/content/tools/intersect.html
|
|
licence: ["MIT"]
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- intervals1:
|
|
type: file
|
|
description: BAM/BED/GFF/VCF
|
|
pattern: "*.{bam|bed|gff|vcf}"
|
|
- intervals2:
|
|
type: file
|
|
description: BAM/BED/GFF/VCF
|
|
pattern: "*.{bam|bed|gff|vcf}"
|
|
- extension:
|
|
type: value
|
|
description: Extension of the output file. It is set by the user and corresponds to the file format which depends on arguments (e. g., ".bed", ".bam", ".txt", etc.).
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- intersect:
|
|
type: file
|
|
description: File containing the description of overlaps found between the two features
|
|
pattern: "*.${extension}"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@Emiller88"
|
|
- "@sruthipsuresh"
|
|
- "@drpatelh"
|
|
- "@sidorov-si"
|