mirror of
https://github.com/MillironX/nf-core_modules.git
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c189835b1b
* add drafty controlfreec * get sofatware version * use maps in map * update paths to new and soon-to-be merged test files, add more input docu * Stab at documenting args map * Update syntax * Bit more description * Make the linter happy * tests pass locally * Add outputs & docu * tests are failing locally now :/ but cpn file can also be added * All tests passing, need to update test data again to add folder * Clean up files * Clean up files * Clean up files * Don't know how to get the test to run with the direcotry for now. they pass locally though * Make linter happy * Name process back * Update to use tar folder * fix the checksum
26 lines
822 B
Text
26 lines
822 B
Text
process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName:CONTROLFREEC{
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ext.args = { [
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"sample":[
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inputformat: 'pileup',
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mateorientation: 'FR'
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],
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"general" :[
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bedgraphoutput: "TRUE",
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noisydata: "TRUE",
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minexpectedgc: "0",
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readcountthreshold: "1",
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sex: meta.sex,
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window: "10",
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],
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"control":[
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inputformat: "pileup",
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mateorientation: "FR"
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]
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]
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}
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}
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}
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