millironx/nf-core_modules
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nf-core_modules/tests/modules/hmmcopy/readcounter
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Simon Pearce ae92159762
New subtool: hmmcopy/generatemap (#1168) 
* Initial structure

* Working with local singularity image

* Working generateMap.pl script

* Remote not working bioconda

* Working generateMap with biocontainer

* Lint changes

* Updated hmmcopy container version to be consistent

* Fix failing test

* Remove path to perl

* No hardpath to script

* Update main.nf

Moved version outside of process, add support for zipped fasta file

* Revert to not allowing gzip via pipe, as perl script can't cope

Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk>
2021-12-15 16:57:42 +01:00
..
main.nf Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
nextflow.config Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
test.yml New subtool: hmmcopy/generatemap (#1168) 2021-12-15 16:57:42 +01:00