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b5facb2db2
* first draft * fix test run * Apply suggestions from code review Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update tests/modules/ataqv/mkarv/test.yml * Update tests/modules/ataqv/mkarv/test.yml * Update tests/modules/ataqv/mkarv/test.yml * Update tests/modules/ataqv/mkarv/test.yml * Update tests/modules/ataqv/mkarv/test.yml * Update modules/ataqv/mkarv/nextflow.config * Delete nextflow.config * Update tests/modules/ataqv/mkarv/test.yml * fix linting * fix linting Co-authored-by: bjlang <> Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
19 lines
513 B
Text
19 lines
513 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { ATAQV_ATAQV } from '../../../../modules/ataqv/ataqv/main.nf'
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include { ATAQV_MKARV } from '../../../../modules/ataqv/mkarv/main.nf'
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workflow test_ataqv_mkarv {
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input = [
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[ id:'test', single_end:false ],
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file(params.test_data['sarscov2']['illumina']['test_paired_end_bam'], checkIfExists: true),
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[],
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[]
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]
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ATAQV_ATAQV ( input, 'human', [], [], [] )
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ATAQV_MKARV ( ATAQV_ATAQV.out.json.collect{ it[1]} )
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}
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