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8d4373b4e8
* added bcftools convert * Update modules/bcftools/convert/main.nf Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com> * updated test.yml * Update modules/bcftools/convert/main.nf Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com> * added automatic output type detection * linting * removed a trailing whitespace Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
23 lines
996 B
YAML
23 lines
996 B
YAML
- name: bcftools convert test_bcftools_convert_gvcf
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command: nextflow run ./tests/modules/bcftools/convert -entry test_bcftools_convert_gvcf -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/convert/nextflow.config
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tags:
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- bcftools/convert
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- bcftools
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files:
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- path: output/bcftools/test.vcf.gz
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- name: bcftools convert test_bcftools_convert_gvcf_bed
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command: nextflow run ./tests/modules/bcftools/convert -entry test_bcftools_convert_gvcf_bed -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/convert/nextflow.config
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tags:
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- bcftools/convert
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- bcftools
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files:
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- path: output/bcftools/test.vcf.gz
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- name: bcftools convert test_bcftools_convert_gvcf_to_bcf
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command: nextflow run ./tests/modules/bcftools/convert -entry test_bcftools_convert_gvcf_to_bcf -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/convert/nextflow.config
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tags:
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- bcftools/convert
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- bcftools
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files:
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- path: output/bcftools/test.bcf.gz
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