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2f1555bf77
* feat(pints): Add initial caller module * docs(pints): Add initial documentation * chore: Add TODOs * test(pypints): Use docker image for singularity The image doesn't exist yet for some reason * test(pints): Remove unidirectional peaks hash * style(pints): Align emits
21 lines
655 B
Text
21 lines
655 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PINTS_CALLER } from '../../../../modules/pints/caller/main.nf'
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workflow test_pints_caller {
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input = [
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[ id:'test', single_end:false ], // meta map
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// FIXME Fails if it doesn't find any signals
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[file("https://raw.githubusercontent.com/Kraus-Lab/groHMM/master/inst/extdata/S0mR1.bam", checkIfExists: true),
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file("https://raw.githubusercontent.com/Kraus-Lab/groHMM/master/inst/extdata/S40mR1.bam", checkIfExists: true)]
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]
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PINTS_CALLER ( input )
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}
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// TODO Test single bam input
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// TODO Test single bigwig input
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// TODO Test multiple bigwig input
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