nf-core_modules/tests/modules/bamtools/convert/test.yml
Sébastien Guizard 080320765c
New module: bamtools/convert (#1219)
* 📦 NEW: Add bamtools/convert module

* 👌 IMPROVE: Update output channel name, Add tests for each output format

* 👌 IMPROVE: Add error test

* 🐛 FIX: Remove custom tags

Co-authored-by: Chris Cheshire <chris.j.cheshire@gmail.com>
2022-01-28 09:58:25 +00:00

90 lines
3.2 KiB
YAML

- name: bamtools convert test_bamtools_convert_ext_error
command: nextflow run tests/modules/bamtools/convert -entry test_bamtools_convert_ext_error -c tests/config/nextflow.config
tags:
- bamtools
- bamtools/convert
exit_code: 1
- name: bamtools convert test_bamtools_convert_noext_error
command: nextflow run tests/modules/bamtools/convert -entry test_bamtools_convert_noext_error -c tests/config/nextflow.config
tags:
- bamtools
- bamtools/convert
exit_code: 1
- name: bamtools convert test_bamtools_convert_bed
command: nextflow run tests/modules/bamtools/convert -entry test_bamtools_convert_bed -c tests/config/nextflow.config
tags:
- bamtools
- bamtools/convert
files:
- path: output/bamtools/test.bed
md5sum: 4e34cc15bf31e700f5f3a9f8fffb6c81
- path: output/bamtools/versions.yml
md5sum: eb7a144b8a97965d3482f6f96b8a8243
- name: bamtools convert test_bamtools_convert_fasta
command: nextflow run tests/modules/bamtools/convert -entry test_bamtools_convert_fasta -c tests/config/nextflow.config
tags:
- bamtools
- bamtools/convert
files:
- path: output/bamtools/test.fasta
md5sum: 52aeacf78571862b7e97c7d44ac8f827
- path: output/bamtools/versions.yml
md5sum: 42d19a2b2b07f05edb82b34369dfd754
- name: bamtools convert test_bamtools_convert_fastq
command: nextflow run tests/modules/bamtools/convert -entry test_bamtools_convert_fastq -c tests/config/nextflow.config
tags:
- bamtools
- bamtools/convert
files:
- path: output/bamtools/test.fastq
md5sum: e591c48daad2c56638e5d6f21f1f71c5
- path: output/bamtools/versions.yml
md5sum: 13f0bf8a3e1f8f527f96dabaa5c8051e
- name: bamtools convert test_bamtools_convert_json
command: nextflow run tests/modules/bamtools/convert -entry test_bamtools_convert_json -c tests/config/nextflow.config
tags:
- bamtools
- bamtools/convert
files:
- path: output/bamtools/test.json
md5sum: 04afed696f9f14da85a460353645d1f5
- path: output/bamtools/versions.yml
md5sum: 33d633dbd6209cb93c9b071f8c0ed3b3
- name: bamtools convert test_bamtools_convert_pileup
command: nextflow run tests/modules/bamtools/convert -entry test_bamtools_convert_pileup -c tests/config/nextflow.config
tags:
- bamtools
- bamtools/convert
files:
- path: output/bamtools/test.pileup
md5sum: e5a3cb4a3e1bf980a575fafce6a2826f
- path: output/bamtools/versions.yml
md5sum: fd3ad0edd1e085b1a002e0593d1d5814
- name: bamtools convert test_bamtools_convert_sam
command: nextflow run tests/modules/bamtools/convert -entry test_bamtools_convert_sam -c tests/config/nextflow.config
tags:
- bamtools
- bamtools/convert
files:
- path: output/bamtools/test.sam
md5sum: 61ab3d0de16a9da8b651f9c692e19d5e
- path: output/bamtools/versions.yml
md5sum: 4be470ce3cc0143ae5ae415b612a4965
- name: bamtools convert test_bamtools_convert_yaml
command: nextflow run tests/modules/bamtools/convert -entry test_bamtools_convert_yaml -c tests/config/nextflow.config
tags:
- bamtools
- bamtools/convert
files:
- path: output/bamtools/test.yaml
md5sum: 68b56f198da036fef33e150eb773dc3b
- path: output/bamtools/versions.yml
md5sum: 1116abc088c5edf11bee393961c18b3e