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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
17 lines
1.1 KiB
YAML
17 lines
1.1 KiB
YAML
- name: picard collectmultiplemetrics
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command: nextflow run ./tests/modules/picard/collectmultiplemetrics -entry test_picard_collectmultiplemetrics -c tests/config/nextflow.config
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tags:
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- picard
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- picard/collectmultiplemetrics
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files:
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# These can't be md5'd consistently
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- path: ./output/picard/test.CollectMultipleMetrics.alignment_summary_metrics
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- path: ./output/picard/test.CollectMultipleMetrics.insert_size_metrics
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- path: ./output/picard/test.CollectMultipleMetrics.quality_distribution_metrics
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- path: ./output/picard/test.CollectMultipleMetrics.quality_by_cycle_metrics
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- path: ./output/picard/test.CollectMultipleMetrics.base_distribution_by_cycle_metrics
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- path: ./output/picard/test.CollectMultipleMetrics.quality_by_cycle.pdf
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- path: ./output/picard/test.CollectMultipleMetrics.quality_distribution.pdf
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- path: ./output/picard/test.CollectMultipleMetrics.read_length_histogram.pdf
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- path: ./output/picard/test.CollectMultipleMetrics.base_distribution_by_cycle.pdf
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- path: ./output/picard/test.CollectMultipleMetrics.insert_size_histogram.pdf
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