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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
46 lines
1.1 KiB
YAML
46 lines
1.1 KiB
YAML
name: pairtools_restrict
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description: Assign restriction fragments to pairs
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keywords:
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- sort
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tools:
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- pairtools:
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description: CLI tools to process mapped Hi-C data
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homepage: http://pairtools.readthedocs.io/
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documentation: http://pairtools.readthedocs.io/
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tool_dev_url: https://github.com/mirnylab/pairtools
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doi: ""
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- pairs:
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type: file
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description: pairs file
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- frag:
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type: file
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description: |
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a tab-separated BED file with the positions of restriction fragments
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(chrom, start, end).
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Can be generated using cooler digest.
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- restrict:
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type: file
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description: Filtered pairs file
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pattern: "*.{pairs.gz}"
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authors:
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- "@jianhong"
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