mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 12:43:09 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
45 lines
1.1 KiB
YAML
45 lines
1.1 KiB
YAML
name: tabix_bgziptabix
|
|
description: bgzip a sorted tab-delimited genome file and then create tabix index
|
|
keywords:
|
|
- bgzip
|
|
- compress
|
|
- index
|
|
- tabix
|
|
- vcf
|
|
tools:
|
|
- tabix:
|
|
description: Generic indexer for TAB-delimited genome position files.
|
|
homepage: https://www.htslib.org/doc/tabix.html
|
|
documentation: https://www.htslib.org/doc/tabix.1.html
|
|
doi: 10.1093/bioinformatics/btq671
|
|
licence: ["MIT"]
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- tab:
|
|
type: file
|
|
description: TAB-delimited genome position file
|
|
pattern: "*.{bed,gff,sam,vcf}"
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- gz:
|
|
type: file
|
|
description: Output compressed file
|
|
pattern: "*.{gz}"
|
|
- tbi:
|
|
type: file
|
|
description: tabix index file
|
|
pattern: "*.{gz.tbi}"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@maxulysse"
|