nf-core_modules/tests/software/last/dotplot/test.yml at b3278a1e63403522c785488ee69995e93fca3142 - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-23 03:28:17 +00:00

Charles Plessy c8168bc351

Update last module (#533 )

* Update LAST to version 1238.

* Update functions.nf to the latest devel version.

* Update test MD5sums after updating software version.

* Make portable on MacOS

* Allow input alignments to be uncompressed.

While the strategy in this family of modules is to make all inputs and
outputs compressed, this change might be useful to some users.

As of LAST 2138, `last/split` does not allow its input to be compressed.

* Search for .des file, that is guaranteed to be unique.

Some LAST indexes have more than one .bck file and it makes the name
detection crash.

In this commit, I also standardise how the names are detected.

* Use value input channel and optional output channels to handle formats.

As discussed on Slack, it is preferred to use a value input channel
instead of sneaking options through `params.args2` or `params.format`
as we did.

Likewise, optional output channels with clearly labeled format are
preferred to 'catch-all' wildcards.

2021-06-14 12:27:27 +01:00

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 - name: last dotplot test_last_dotplot
   command: nextflow run tests/software/last/dotplot -entry test_last_dotplot -c tests/config/nextflow.config
   tags:
     - last/dotplot
     - last
   files:
     - path: output/last/test.png
       md5sum: 6189aaf96f522cdb664869724997bbcd