mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
15c7190e22
* fix: remove left-over unnecessary code * Switch to more portable solution for singularity container issue by using bind paths * Fix input collision of dummy files * Repalce dummy with which bash * Remove dummy usage from tests * Apply suggestions from code review * Fix singularity typo
19 lines
538 B
Text
19 lines
538 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { DEEPARG_DOWNLOADDATA } from '../../../../modules/deeparg/downloaddata/main.nf'
|
|
include { DEEPARG_PREDICT } from '../../../../modules/deeparg/predict/main.nf'
|
|
|
|
workflow test_deeparg_predict {
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['bacteroides_fragilis']['genome']['genome_fna_gz'], checkIfExists: true),
|
|
'LS'
|
|
]
|
|
|
|
DEEPARG_DOWNLOADDATA( )
|
|
DEEPARG_PREDICT ( input, DEEPARG_DOWNLOADDATA.out.db )
|
|
|
|
}
|