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applybqsr
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Update md5sums
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2022-05-12 16:07:12 +02:00 |
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applybqsrspark
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Update md5sums
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2022-05-12 16:07:12 +02:00 |
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applyvqsr
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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baserecalibrator
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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baserecalibratorspark
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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bedtointervallist
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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calculatecontamination
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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combinegvcfs
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double tmpdir args removed, porb leftover after massive refactor where we decided to make it mandatory everywhere
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2022-05-12 16:16:53 +02:00 |
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createsequencedictionary
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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createsomaticpanelofnormals
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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estimatelibrarycomplexity
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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fastqtosam
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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filtermutectcalls
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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gatherbqsrreports
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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gatherpileupsummaries
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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genomicsdbimport
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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genotypegvcfs
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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getpileupsummaries
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getpileupsummaries requires intervals files
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2022-05-12 16:51:17 +02:00 |
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haplotypecaller
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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indexfeaturefile
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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intervallisttobed
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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intervallisttools
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Update md5sums
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2022-05-12 16:07:12 +02:00 |
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learnreadorientationmodel
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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markduplicates
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Update md5sums
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2022-05-12 16:07:12 +02:00 |
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markduplicatesspark
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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mergebamalignment
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fix datatest for stubs
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2022-05-06 15:34:18 +02:00 |
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mergemutectstats
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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mergevcfs
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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mutect2
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fix datatest for stubs
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2022-05-06 15:34:18 +02:00 |
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revertsam
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fix datatest for stubs
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2022-05-06 15:34:18 +02:00 |
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samtofastq
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fix datatest for stubs
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2022-05-06 15:34:18 +02:00 |
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selectvariants
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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splitncigarreads
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Update md5sums
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2022-05-12 16:07:12 +02:00 |
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variantfiltration
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
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2022-04-12 17:15:39 +02:00 |
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variantrecalibrator
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Update md5sums
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2022-05-12 16:07:12 +02:00 |
