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36 lines
1.4 KiB
YAML
36 lines
1.4 KiB
YAML
- name: bam stats samtools single-end
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command: nextflow run ./tests/subworkflows/nf-core/bam_stats_samtools -entry test_bam_stats_samtools_single_end -c ./tests/config/nextflow.config -c ./tests/subworkflows/nf-core/bam_stats_samtools/nextflow.config
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tags:
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- subworkflows
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- subworkflows/bam_stats_samtools
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- bam_stats_samtools
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# Modules
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- samtools
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- samtools/stats
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- samtools/idxstats
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- samtools/flagstat
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files:
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- path: ./output/samtools/test.single_end.sorted.bam.flagstat
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md5sum: 2191911d72575a2358b08b1df64ccb53
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- path: ./output/samtools/test.single_end.sorted.bam.idxstats
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md5sum: 613e048487662c694aa4a2f73ca96a20
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- path: ./output/samtools/test.single_end.sorted.bam.stats
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- name: bam stats samtools paired-end
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command: nextflow run ./tests/subworkflows/nf-core/bam_stats_samtools -entry test_bam_stats_samtools_paired_end -c ./tests/config/nextflow.config -c ./tests/subworkflows/nf-core/bam_stats_samtools/nextflow.config
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tags:
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- subworkflows
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- subworkflows/bam_stats_samtools
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- bam_stats_samtools
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# Modules
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- samtools
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- samtools/stats
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- samtools/idxstats
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- samtools/flagstat
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files:
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- path: ./output/samtools/test.paired_end.sorted.bam.flagstat
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md5sum: 4f7ffd1e6a5e85524d443209ac97d783
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- path: ./output/samtools/test.paired_end.sorted.bam.idxstats
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md5sum: df60a8c8d6621100d05178c93fb053a2
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- path: ./output/samtools/test.paired_end.sorted.bam.stats
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