mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
a9dd46f010
* nf-core modules create * add module files * indent * remove templte code * manually revert pytest changes from tools * manually revert pytest changes from tools * add include statement back in Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
43 lines
1.1 KiB
YAML
43 lines
1.1 KiB
YAML
name: gatk4_gatherbqsrreports
|
|
description: write your description here
|
|
keywords:
|
|
- gatk4
|
|
- gatk4_gatherbqsrreports
|
|
- base_recalibration
|
|
tools:
|
|
- gatk4:
|
|
description: Genome Analysis Toolkit (GATK4)
|
|
homepage: https://gatk.broadinstitute.org/hc/en-us
|
|
documentation: https://gatk.broadinstitute.org/hc/en-us
|
|
tool_dev_url: https://github.com/broadinstitute/gatk
|
|
doi: "10.1158/1538-7445.AM2017-3590"
|
|
licence: ['BSD-3-clause']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- recal_table:
|
|
type: file
|
|
description: File(s) containing BQSR table(s)
|
|
pattern: "*.table"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- recal_table:
|
|
type: file
|
|
description: File containing joined BQSR table
|
|
pattern: "*.table"
|
|
|
|
authors:
|
|
- "@FriederikeHanssen"
|