mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
32 lines
920 B
Text
32 lines
920 B
Text
// Import generic module functions
|
|
include { initOptions; saveFiles; getSoftwareName } from './functions'
|
|
|
|
params.options = [:]
|
|
def options = initOptions(params.options)
|
|
|
|
process MULTIQC {
|
|
tag "multiqc"
|
|
label 'process_medium'
|
|
publishDir "${params.outdir}",
|
|
mode: params.publish_dir_mode,
|
|
saveAs: { filename -> saveFiles(filename: filename, options: params.options, publish_dir: getSoftwareName(task.process), publish_id:'') }
|
|
|
|
conda(params.enable_conda ? "bioconda::multiqc=1.9" : null)
|
|
container "quay.io/biocontainers/multiqc:1.9--py_1"
|
|
|
|
input:
|
|
path(generic_report)
|
|
|
|
output:
|
|
path "multiqc_data", emit: dir
|
|
path "multiqc_report.html", emit: html
|
|
path "*.version.txt", emit: version
|
|
|
|
script:
|
|
def software = getSoftwareName(task.process)
|
|
|
|
"""
|
|
multiqc .
|
|
multiqc --version | sed -e "s/multiqc, version //g" > ${software}.version.txt
|
|
"""
|
|
}
|