| .. |
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abacas
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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adapterremoval
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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agrvate
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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allelecounter
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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amps
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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arriba
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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artic
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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assemblyscan
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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ataqv/ataqv
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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bakta
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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bamaligncleaner
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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bamtools/split
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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bamutil/trimbam
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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bandage/image
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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bbmap
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Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
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bcftools
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Bump software versions for viralrecon modules (#1198)
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2022-01-07 17:52:39 +00:00 |
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bedtools
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Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
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bismark
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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blast
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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bowtie
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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bowtie2
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Bump software versions for viralrecon modules (#1198)
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2022-01-07 17:52:39 +00:00 |
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bwa
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Add new boolean sort_bam as input to be able to chose between sort and view in bwamem and bwamem2mem (#1125)
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2021-12-08 14:31:27 +00:00 |
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bwamem2
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Add new boolean sort_bam as input to be able to chose between sort and view in bwamem and bwamem2mem (#1125)
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2021-12-08 14:31:27 +00:00 |
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bwameth
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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cat
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Editing the CAT/CAT module to handle single files (#1196)
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2022-01-06 16:41:36 +00:00 |
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cellranger
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Add Cell Ranger mkfastq, mkgtf, and count (#979)
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2021-12-02 14:27:20 +00:00 |
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checkm/lineagewf
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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chromap
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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clonalframeml
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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cmseq/polymut
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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cnvkit/batch
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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cooler
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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csvtk
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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custom
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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cutadapt
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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damageprofiler
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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dastool
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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dedup
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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deeptools
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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delly/call
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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diamond
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Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
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dragmap
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feat: update dragmap to follow new bwa/mem + bwamem2/mem logic (#1146)
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2021-12-08 23:19:37 +01:00 |
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dragonflye
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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dshbio
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Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
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ectyper
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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emmtyper
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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ensemblvep
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greatly simplify syntax (#1121)
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2021-12-07 11:18:12 +01:00 |
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expansionhunter
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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fargene
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takes gunzip out of fargene main.nf (#1090)
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2021-11-29 14:32:23 +01:00 |
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fastani
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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fastp
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Bump software versions for viralrecon modules (#1198)
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2022-01-07 17:52:39 +00:00 |
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fastqc
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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fastqscan
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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fasttree
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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fgbio
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Added UMI sub-workflow (#1098)
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2021-12-09 11:16:40 +01:00 |
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filtlong
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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flash
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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freebayes
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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gatk4
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Log4j again (#1202)
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2022-01-12 13:55:54 +01:00 |
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genmap
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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genrich
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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gffread
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Replace remaining task.ext.suffix with task.ext.prefix (#1117)
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2021-12-07 15:00:43 +01:00 |
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glnexus
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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graphmap2
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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gstama
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Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
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gtdbtk/classifywf
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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gubbins
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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gunc
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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gunzip
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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hicap
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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hifiasm
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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hisat2
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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hmmcopy
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hmmcopy/mapCounter (#1175)
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2021-12-17 15:39:50 +00:00 |
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hmmer/hmmalign
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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homer
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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idr
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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imputeme/vcftoprs
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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iqtree
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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ismapper
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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isoseq3
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Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
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ivar
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Remove params call in ivar variants module (#1203)
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2022-01-12 16:43:26 +00:00 |
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jupyternotebook
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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kallisto/index
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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kallistobustools
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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khmer/normalizebymedian
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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kleborate
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Fix kleborate inputs (#1172)
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2021-12-22 11:39:35 +00:00 |
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kraken2/kraken2
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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krona
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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last
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Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
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leehom
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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lima
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Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
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lissero
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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lofreq
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Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
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macrel/contigs
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Add new module macrel/contigs (#1109)
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2021-12-09 13:17:50 +01:00 |
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macs2/callpeak
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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malt
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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maltextract
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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manta
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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mapdamage2
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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mash
|
add module for mash dist (#1193)
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2022-01-04 17:29:49 +01:00 |
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mashtree
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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maxbin2
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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medaka
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Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
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megahit
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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meningotype
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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metabat2
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Update metabat2 output channels and compression (#1111)
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2021-12-09 15:00:32 +01:00 |
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metaphlan3
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Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
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methyldackel
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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minia
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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miniasm
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Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
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minimap2
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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mlst
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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mosdepth
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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msisensor
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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mtnucratio
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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multiqc
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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mummer
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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muscle
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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nanolyse
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Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
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nanoplot
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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ncbigenomedownload
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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nextclade
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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ngmaster
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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nucmer
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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optitype
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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pairix
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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pairtools
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
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pangolin
|
Bump software versions for viralrecon modules (#1198)
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2022-01-07 17:52:39 +00:00 |
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paraclu
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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pbbam/pbmerge
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Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
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pbccs
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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peddy
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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phyloflash
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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picard
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
|
pirate
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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plasmidid
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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plink
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
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plink2/vcf
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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pmdtools/filter
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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porechop
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
|
preseq/lcextrap
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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prodigal
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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prokka
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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pycoqc
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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pydamage
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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qcat
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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qualimap/bamqc
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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quast
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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racon
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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rapidnj
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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rasusa
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
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raxmlng
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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rmarkdownnotebook
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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roary
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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rsem
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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rseqc
|
Provide BAI when running rseqc/tin (#1177)
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2021-12-17 10:00:09 +00:00 |
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salmon
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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samblaster
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
|
samtools
|
Bump software versions for viralrecon modules (#1198)
|
2022-01-07 17:52:39 +00:00 |
|
scoary
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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seacr/callpeak
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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seqkit/split2
|
Update version & prefix (#1120)
|
2021-12-07 10:22:32 +01:00 |
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seqsero2
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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seqtk
|
Replace remaining task.ext.suffix with task.ext.prefix (#1117)
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2021-12-07 15:00:43 +01:00 |
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sequenzautils
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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seqwish/induce
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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shovill
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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snpdists
|
Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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snpeff
|
greatly simplify syntax (#1121)
|
2021-12-07 11:18:12 +01:00 |
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snpsift/split
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Added new module snpsift/split (#1031)
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2021-12-17 09:08:14 +01:00 |
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snpsites
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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spades
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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spatyper
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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sratools
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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staphopiasccmec
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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star
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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strelka
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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stringtie
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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subread/featurecounts
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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tabix
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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tbprofiler/profile
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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tiddit
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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trimgalore
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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ucsc
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ucsc/wigtobigwig: add meta map (#1199)
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2022-01-11 21:31:37 +00:00 |
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ultra/pipeline
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Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
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2021-12-02 12:39:55 +00:00 |
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unicycler
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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untar
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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unzip
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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variantbam
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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vcftools
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
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yara
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Update all modules to new NF DSL2 syntax (#1099)
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2021-11-26 07:58:40 +00:00 |
