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40 lines
1 KiB
YAML
40 lines
1 KiB
YAML
name: bamaligncleaner
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description: removes unused references from header of sorted BAM/CRAM files.
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keywords:
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- bam
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tools:
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- bamaligncleaner:
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description: Removes unaligned references in aligned BAM alignment file
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homepage: https://github.com/maxibor/bamAlignCleaner
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documentation: https://github.com/maxibor/bamAlignCleaner
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tool_dev_url: https://github.com/maxibor/bamAlignCleaner
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licence: ['GPL v3']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: BAM/CRAM file
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pattern: "*.{bam,cram}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- bam:
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type: file
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description: Sorted BAM/CRAM file
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pattern: "*.{bam,cram}"
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authors:
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- "@jfy133"
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