nf-core_modules/modules/nucmer/meta.yml
Sateesh d5f6985607
add new nucmer module (#945)
* add new nucmer module

* Apply suggestions from code review

Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>

* update tests with file produced by input

* Update main.nf

* Update meta.yml

Co-authored-by: Michael Cipriano <mcipriano@gmail.com>
Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-11-15 22:05:34 +00:00

50 lines
1.4 KiB
YAML

name: nucmer
description: NUCmer is a pipeline for the alignment of multiple closely related nucleotide sequences.
keywords:
- align
- nucleotide
tools:
- nucmer:
description: NUCmer is a pipeline for the alignment of multiple closely related nucleotide sequences.
homepage: http://mummer.sourceforge.net/
documentation: http://mummer.sourceforge.net/
tool_dev_url: http://mummer.sourceforge.net/
doi: "https://doi.org/10.1186/gb-2004-5-2-r12"
licence: ['The Artistic License']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- ref:
type: file
description: FASTA file of the reference sequence
pattern: "*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}"
- query:
type: file
description: FASTA file of the query sequence
pattern: "*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- delta:
type: file
description: File containing coordinates of matches between reference and query
- coords:
type: file
description: NUCmer1.1 coords output file
pattern: "*.{coords}"
authors:
- "@sateeshperi"
- "@mjcipriano"