mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
30 lines
No EOL
1.1 KiB
YAML
30 lines
No EOL
1.1 KiB
YAML
- name: ivar variants no gff no mpileup
|
|
command: nextflow run ./tests/software/ivar/variants -entry test_ivar_variants_no_gff_no_mpileup -c tests/config/nextflow.config
|
|
tags:
|
|
- ivar
|
|
- ivar_variants
|
|
files:
|
|
- path: output/ivar/test.tsv
|
|
md5sum: 3fd376b8ad80f27a999edf3345d2014a
|
|
|
|
- name: ivar variants no gff with mpileup
|
|
command: nextflow run ./tests/software/ivar/variants -entry test_ivar_variants_no_gff_with_mpileup -c tests/config/nextflow.config --save_mpileup
|
|
tags:
|
|
- ivar
|
|
- ivar_variants
|
|
files:
|
|
- path: output/ivar/test.tsv
|
|
md5sum: 3fd376b8ad80f27a999edf3345d2014a
|
|
- path: output/ivar/test.mpileup
|
|
md5sum: b3dfd337dfcd313d6cc9680d7e796fe6
|
|
|
|
- name: ivar variants with gff with mpileup
|
|
command: nextflow run ./tests/software/ivar/variants -entry test_ivar_variants_with_gff_with_mpileup -c tests/config/nextflow.config --gff tests/data/gff/sarscov2/MN908947.3.gff3 --save_mpileup
|
|
tags:
|
|
- ivar
|
|
- ivar_variants
|
|
files:
|
|
- path: output/ivar/test.tsv
|
|
md5sum: 3fd376b8ad80f27a999edf3345d2014a
|
|
- path: output/ivar/test.mpileup
|
|
md5sum: b3dfd337dfcd313d6cc9680d7e796fe6 |