mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-13 05:13:09 +00:00
50eafb19c6
* Update version for log4j vulnerability * update checksums * update checksums * update checksums * Remove todo string * remove werid output paths * remove werid output paths * remove werid output paths * Update various checksums * Update various checksums * Remove unstable md5sums * Update md5sums * Fix pileupsummary * Fix genotypegvcfs * Update test files mutect2 * hm genotypevcf updated again * Update some mutect checksums and whatnot * Fix last mutect checksum * Apply suggestion to use mtochondria data instead
55 lines
2.2 KiB
YAML
55 lines
2.2 KiB
YAML
- name: gatk4 mutect2 test_gatk4_mutect2_tumor_normal_pair
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command: nextflow run ./tests/modules/gatk4/mutect2 -entry test_gatk4_mutect2_tumor_normal_pair -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/mutect2/nextflow.config
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tags:
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- gatk4
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- gatk4/mutect2
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files:
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- path: output/gatk4/test.f1r2.tar.gz
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- path: output/gatk4/test.vcf.gz
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- path: output/gatk4/test.vcf.gz.stats
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md5sum: 17d2091015d04cbd4a26b7a67dc659e6
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- path: output/gatk4/test.vcf.gz.tbi
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- name: gatk4 mutect2 test_gatk4_mutect2_tumor_single
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command: nextflow run ./tests/modules/gatk4/mutect2 -entry test_gatk4_mutect2_tumor_single -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/mutect2/nextflow.config
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tags:
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- gatk4
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- gatk4/mutect2
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files:
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- path: output/gatk4/test.vcf.gz
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- path: output/gatk4/test.vcf.gz.stats
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md5sum: 55ed641e16089afb33cdbc478e202d3d
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- path: output/gatk4/test.vcf.gz.tbi
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- name: gatk4 mutect2 test_gatk4_mutect2_cram_input
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command: nextflow run ./tests/modules/gatk4/mutect2 -entry test_gatk4_mutect2_cram_input -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/mutect2/nextflow.config
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tags:
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- gatk4
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- gatk4/mutect2
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files:
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- path: output/gatk4/test.vcf.gz
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- path: output/gatk4/test.vcf.gz.stats
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md5sum: 55ed641e16089afb33cdbc478e202d3d
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- path: output/gatk4/test.vcf.gz.tbi
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- name: gatk4 mutect2 test_gatk4_mutect2_generate_pon
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command: nextflow run ./tests/modules/gatk4/mutect2 -entry test_gatk4_mutect2_generate_pon -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/mutect2/nextflow.config
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tags:
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- gatk4
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- gatk4/mutect2
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files:
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- path: output/gatk4/test.vcf.gz
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- path: output/gatk4/test.vcf.gz.stats
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md5sum: b569ce66bbffe9588b3d221e821023ee
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- path: output/gatk4/test.vcf.gz.tbi
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- name: gatk4 mutect2 test_gatk4_mutect2_mitochondria
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command: nextflow run ./tests/modules/gatk4/mutect2 -entry test_gatk4_mutect2_mitochondria -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/mutect2/nextflow.config
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tags:
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- gatk4
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- gatk4/mutect2
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files:
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- path: output/gatk4/test.vcf.gz
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- path: output/gatk4/test.vcf.gz.stats
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md5sum: fc6ea14ca2da346babe78161beea28c9
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- path: output/gatk4/test.vcf.gz.tbi
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