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d9e48b70ca
* add software/pairtools * create a branch for pairtools/restrict * fix the different output of conda and docker * remove customized code. * add newline to Frag.bed file. * change the folder of frag.bed. * change \n to \r\n * Remove work.frag.bed Co-authored-by: JoseEspinosa <kadomu@gmail.com>
46 lines
1.1 KiB
YAML
46 lines
1.1 KiB
YAML
name: pairtools_restrict
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description: Assign restriction fragments to pairs
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keywords:
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- sort
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tools:
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- pairtools:
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description: CLI tools to process mapped Hi-C data
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homepage: http://pairtools.readthedocs.io/
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documentation: http://pairtools.readthedocs.io/
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tool_dev_url: https://github.com/mirnylab/pairtools
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doi: ""
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- pairs:
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type: file
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description: pairs file
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- frag:
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type: file
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description: |
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a tab-separated BED file with the positions of restriction fragments
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(chrom, start, end).
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Can be generated using cooler digest.
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- restrict:
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type: file
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description: Filtered pairs file
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pattern: "*.{pairs.gz}"
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authors:
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- "@jianhong"
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