mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 05:43:08 +00:00
b59e8054e4
* bump bcftools filter * junctionsaturation meta.yml and test * pytest config entry * bump bcftools version down again * fix test * fix bcftools
44 lines
1.2 KiB
YAML
44 lines
1.2 KiB
YAML
name: rseqc_junctionsaturation
|
|
description: compare detected splice junctions to reference gene model
|
|
keywords:
|
|
- junctions
|
|
- splicing
|
|
- rnaseq
|
|
tools:
|
|
- rseqc:
|
|
description: |
|
|
RSeQC package provides a number of useful modules that can comprehensively evaluate
|
|
high throughput sequence data especially RNA-seq data.
|
|
homepage: http://rseqc.sourceforge.net/
|
|
documentation: http://rseqc.sourceforge.net/
|
|
doi: 10.1093/bioinformatics/bts356
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bam:
|
|
type: file
|
|
description: the alignment in bam format
|
|
pattern: "*.{bam}"
|
|
- bed:
|
|
type: file
|
|
description: a bed file for the reference gene model
|
|
pattern: "*.{bed}"
|
|
output:
|
|
- pdf:
|
|
type: file
|
|
description: Junction saturation report
|
|
pattern: "*.pdf"
|
|
- rscript:
|
|
type: file
|
|
description: Junction saturation R-script
|
|
pattern: "*.r"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
authors:
|
|
- "@drpatelh"
|
|
- "@kevinmenden"
|