mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-22 16:12:04 +00:00
6ad50f8ec4
* add stringtie merge module * add md5sum and path for stringtie.merged.gtf * fix errors * try fixing stringtie check error * add tag * remove unreproducible md5sum * address PR suggestions * hopefully fix linting error
31 lines
862 B
YAML
31 lines
862 B
YAML
name: stringtie_merge
|
|
description: Merges the annotation gtf file and the stringtie output gtf files
|
|
keywords:
|
|
- merge
|
|
- gtf
|
|
- reference
|
|
tools:
|
|
- stringtie2:
|
|
description: |
|
|
Transcript assembly and quantification for RNA-Seq
|
|
homepage: https://ccb.jhu.edu/software/stringtie/index.shtml
|
|
documentation: https://ccb.jhu.edu/software/stringtie/index.shtml?t=manual
|
|
input:
|
|
- stringtie_gtf:
|
|
type: file
|
|
description: |
|
|
Stringtie transcript gtf output(s).
|
|
pattern: "*.gtf"
|
|
- annotation_gtf:
|
|
type: file
|
|
description: |
|
|
Annotation gtf file.
|
|
pattern: "*.gtf"
|
|
output:
|
|
- merged_gtf:
|
|
type: map
|
|
description: |
|
|
Merged gtf from annotation and stringtie output gtfs.
|
|
pattern: "*.gtf"
|
|
authors:
|
|
- "@yuukiiwa"
|