nf-core_modules/tests/software/qualimap/bamqc/main.nf
2021-02-17 17:34:51 +01:00

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { QUALIMAP_BAMQC } from '../../../../software/qualimap/bamqc/main.nf' addParams( options: [:] )
workflow test_qualimap_bamqc {
def input = []
input = [ [ id:'test', single_end:false ], // meta map
file("${launchDir}/tests/data/bam/test.paired_end.sorted.bam", checkIfExists: true) ]
def gff = file("dummy_file.txt")
def use_gff = false
QUALIMAP_BAMQC ( input, gff, use_gff )
}