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b5b3ff16ce
* add module for fastq-scan * change fastq to reads * remove uncompressed support Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
43 lines
1 KiB
YAML
43 lines
1 KiB
YAML
name: fastqscan
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description: FASTQ summary statistics in JSON format
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keywords:
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- fastq
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- summary
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- statistics
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tools:
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- fastqscan:
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description: FASTQ summary statistics in JSON format
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homepage: https://github.com/rpetit3/fastq-scan
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documentation: https://github.com/rpetit3/fastq-scan
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tool_dev_url: https://github.com/rpetit3/fastq-scan
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doi: ""
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: FASTQ file
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pattern: "*.{fastq.gz,fq.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- json:
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type: file
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description: JSON formatted file of summary statistics
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pattern: "*.json"
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authors:
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- "@rpetit3"
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