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45 lines
1.2 KiB
YAML
45 lines
1.2 KiB
YAML
name: bedtools_subtract
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description: Finds overlaps between two sets of regions (A and B), removes the overlaps from A and reports the remaining portion of A.
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keywords:
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- bed
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- gff
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- vcf
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- subtract
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tools:
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- bedtools:
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description: |
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A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
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documentation: https://bedtools.readthedocs.io/en/latest/content/tools/subtract.html
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- intervals1:
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type: file
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description: BED/GFF/VCF
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pattern: "*.{bed|gff|vcf}"
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- intervals2:
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type: file
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description: BED/GFF/VCF
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pattern: "*.{bed|gff|vcf}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bed:
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type: file
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description: File containing the difference between the two sets of features
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patters: "*.bed"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@sidorov-si"
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