nf-core_modules/modules/methyldackel/mbias/meta.yml

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YAML

name: methyldackel_mbias
description: Generates methylation bias plots from alignments
keywords:
- methylation
- 5mC
- methylseq
- bisulphite
- methylation bias
- mbias
- qc
- bam
- cram
tools:
- methyldackel:
description: |
A (mostly) universal methylation extractor
for BS-seq experiments.
homepage: https://github.com/brentp/bwa-meth
documentation: https://github.com/brentp/bwa-meth
arxiv: arXiv:1401.1129
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fasta:
type: file
description: Input genome fasta file
pattern: "*.{fasta,fa}"
- fai:
type: file
description: FASTA index file
pattern: "*.{fai}"
- bam:
type: file
description: BAM/CRAM file
pattern: "*.{bam,cram}"
- bai:
type: file
description: BAM/CRAM index file
pattern: "*.{bai,crai}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- txt:
type: file
description: Text file containing methylation bias
pattern: "*.{txt}"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@phue"