mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
09acfad211
* added the module * updated test.yml * Update modules/gatk4/collectreadcounts/main.nf Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> * small fix * tests update * linting * tests update (again) Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
25 lines
1.1 KiB
YAML
25 lines
1.1 KiB
YAML
- name: gatk4 collectreadcounts test_gatk4_collectreadcounts_hdf5
|
|
command: nextflow run ./tests/modules/gatk4/collectreadcounts -entry test_gatk4_collectreadcounts_hdf5 -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/collectreadcounts/nextflow.config
|
|
tags:
|
|
- gatk4/collectreadcounts
|
|
- gatk4
|
|
files:
|
|
- path: output/gatk4/test.hdf5
|
|
|
|
- name: gatk4 collectreadcounts test_gatk4_collectreadcounts_tsv
|
|
command: nextflow run ./tests/modules/gatk4/collectreadcounts -entry test_gatk4_collectreadcounts_tsv -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/collectreadcounts/nextflow.config
|
|
tags:
|
|
- gatk4/collectreadcounts
|
|
- gatk4
|
|
files:
|
|
- path: output/gatk4/test.tsv
|
|
md5sum: 8e45a6164916c303387f39f02ce45841
|
|
|
|
- name: gatk4 collectreadcounts test_gatk4_collectreadcounts_cram
|
|
command: nextflow run ./tests/modules/gatk4/collectreadcounts -entry test_gatk4_collectreadcounts_cram -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/collectreadcounts/nextflow.config
|
|
tags:
|
|
- gatk4/collectreadcounts
|
|
- gatk4
|
|
files:
|
|
- path: output/gatk4/test.tsv
|
|
md5sum: d9a32039b7a84f5bb74e8382e5427670
|