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18 lines
547 B
Text
18 lines
547 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { WHAMG } from '../../../modules/whamg/main.nf'
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workflow test_whamg_bam {
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input = [
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[ id:'test' ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam_bai'], checkIfExists: true)
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]
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fasta = file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
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WHAMG ( input, fasta )
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}
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