mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
46 lines
1.2 KiB
YAML
46 lines
1.2 KiB
YAML
name: vcflib_vcfuniq
|
|
description: List unique genotypes. Like GNU uniq, but for VCF records. Remove records which have the same position, ref, and alt as the previous record.
|
|
keywords:
|
|
- vcf
|
|
- uniq
|
|
- deduplicate
|
|
tools:
|
|
- vcflib:
|
|
description: Command-line tools for manipulating VCF files
|
|
homepage: https://github.com/vcflib/vcflib
|
|
documentation: https://github.com/vcflib/vcflib#USAGE
|
|
doi: "https://doi.org/10.1101/2021.05.21.445151"
|
|
licence: ["MIT"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- vcf:
|
|
type: file
|
|
description: Compressed VCF file
|
|
pattern: "*.vcf.gz"
|
|
- tbi:
|
|
type: file
|
|
description: Index of VCF file
|
|
pattern: "*.vcf.gz.tbi"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- vcf:
|
|
type: file
|
|
description: Compressed VCF file
|
|
pattern: "*.vcf.gz"
|
|
|
|
authors:
|
|
- "@drpatelh"
|