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1016c9bd1a
* Initial commit of seqtk/seq module files * pytest.yml * updated module and tests code, need to finish modules/main.nf * Initial commit of seqtk/seq module files * pytest.yml * updated module and tests code, need to finish modules/main.nf * Adding code and configs for seqtk/seq module * Re-tested module following minor code update * removed trailing whitespace errors * Changed variable name to following reviewer suggestions Co-authored-by: Sateesh <33637490+sateeshperi@users.noreply.github.com>
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542 B
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19 lines
No EOL
542 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SEQTK_SEQ } from '../../../../modules/seqtk/seq/main.nf'
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workflow test_seqtk_seq {
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input = [ [ id:'test' ], // meta map
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[ file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) ]
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]
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SEQTK_SEQ ( input )
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}
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workflow test_seqtk_seq_fq {
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input = [ [ id:'test' ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ]
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]
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SEQTK_SEQ ( input )
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} |