mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
36 lines
975 B
Text
36 lines
975 B
Text
def VERSION = '2.8' // Version information not provided by tool on CLI
|
|
|
|
process KRONA_KTIMPORTTAXONOMY {
|
|
tag "${meta.id}"
|
|
label 'process_high'
|
|
|
|
conda (params.enable_conda ? "bioconda::krona=2.8" : null)
|
|
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
|
|
'https://depot.galaxyproject.org/singularity/krona:2.8--pl5262hdfd78af_2' :
|
|
'quay.io/biocontainers/krona:2.8--pl5262hdfd78af_2' }"
|
|
|
|
input:
|
|
tuple val(meta), path(report)
|
|
path "taxonomy/taxonomy.tab"
|
|
|
|
output:
|
|
tuple val(meta), path ('*.html'), emit: html
|
|
path "versions.yml" , emit: versions
|
|
|
|
when:
|
|
task.ext.when == null || task.ext.when
|
|
|
|
script:
|
|
def args = task.ext.args ?: ''
|
|
"""
|
|
ktImportTaxonomy \\
|
|
$args \\
|
|
-tax taxonomy/ \\
|
|
"$report"
|
|
|
|
cat <<-END_VERSIONS > versions.yml
|
|
"${task.process}":
|
|
krona: $VERSION
|
|
END_VERSIONS
|
|
"""
|
|
}
|