mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 14:13:09 +00:00
c9b29c7686
* Add eido/convert module * Run prettier * Update modules/eido/convert/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/eido/convert/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update extension format Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
22 lines
696 B
Text
22 lines
696 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { EIDO_CONVERT } from '../../../../modules/eido/convert/main.nf'
|
|
|
|
workflow test_eido_convert_nextflow_samplesheet {
|
|
|
|
nextflow_samplesheet = file("https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/delete_me/pep/test_nextflow_original_samplesheet.csv", checkIfExists: true)
|
|
format = "csv"
|
|
|
|
EIDO_CONVERT ( nextflow_samplesheet, format )
|
|
}
|
|
|
|
|
|
workflow test_eido_convert_pep_project {
|
|
|
|
pep_project = file("https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/delete_me/pep/test_pep_format_files/config.yaml", checkIfExists: true)
|
|
format = "csv"
|
|
|
|
EIDO_CONVERT ( pep_project, format )
|
|
}
|