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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
37 lines
924 B
YAML
37 lines
924 B
YAML
name: star_genomegenerate
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description: Create index for STAR
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keywords:
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- index
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- fasta
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- genome
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- reference
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tools:
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- star:
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description: |
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STAR is a software package for mapping DNA sequences against
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a large reference genome, such as the human genome.
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homepage: https://github.com/alexdobin/STAR
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manual: https://github.com/alexdobin/STAR/blob/master/doc/STARmanual.pdf
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doi: 10.1093/bioinformatics/bts635
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licence: ["MIT"]
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input:
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- fasta:
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type: file
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description: Fasta file of the reference genome
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- gtf:
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type: file
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description: GTF file of the reference genome
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output:
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- index:
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type: directory
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description: Folder containing the star index files
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pattern: "star"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@kevinmenden"
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- "@drpatelh"
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