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16 lines
592 B
Text
16 lines
592 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { FASTQC } from '../../../software/fastqc/main.nf' addParams( options: [:] )
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include { MULTIQC } from '../../../software/multiqc/main.nf' addParams( options: [:] )
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workflow test_multiqc {
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def input = []
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input = [ [ id: 'test', single_end: false ],
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[ file("${launchDir}/tests/data/fastq/rna/test_R1.fastq.gz", checkIfExists: true),
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file("${launchDir}/tests/data/fastq/rna/test_R2.fastq.gz", checkIfExists: true) ] ]
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FASTQC ( input )
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MULTIQC ( FASTQC.out.zip.collect { it[1] } )
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}
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