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bcf2681b03
* 👌 IMPROVE: Add some pacbio test files * 📦 NEW: Add pbbam/pbmerge module * 🐛 FIX: Add optional arguments to command line * 👌 IMPROVE: Update to last templates version * 👌 IMPROVE: Update module to last template version * 👌 IMPROVE: Update test data config and test script * 👌 IMPROVE: Remove useless index + Fix Typos * 👌 IMPROVE: Add some pacbio test files * 📦 NEW: Add pbbam/pbmerge module * 🐛 FIX: Add optional arguments to command line * 👌 IMPROVE: Update to last templates version * 👌 IMPROVE: Update module to last template version * 👌 IMPROVE: Update test data config and test script * 👌 IMPROVE: Remove useless index + Fix Typos * 👌 IMPROVE: Update and clean code * 🐛 FIX: Update module path in test * 🐛 FIX: Add missing () + correct module path in test * 👌 IMPROVE: Update pbmerge from version 1.6.0 to 1.7.0 * 👌 IMPROVE: Change output filename suffix for something more generic * 🐛 Update test.yml * Apply suggestions from code review * Update tests/modules/pbbam/pbmerge/test.yml * Update tests/modules/pbbam/pbmerge/main.nf Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
18 lines
498 B
Text
18 lines
498 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PBBAM_PBMERGE } from '../../../../modules/pbbam/pbmerge/main.nf' addParams( options: [suffix: '.merged'] )
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workflow test_pbbam_pbmerge {
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input = [
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[ id:'test' ], // meta map
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[
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file(params.test_data['homo_sapiens']['pacbio']['cluster'] , checkIfExists: true),
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file(params.test_data['homo_sapiens']['pacbio']['singletons'], checkIfExists: true)
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]
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]
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PBBAM_PBMERGE ( input )
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}
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