mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
36 lines
997 B
YAML
36 lines
997 B
YAML
name: gunc_downloaddb
|
|
description: Download database for GUNC detection of Chimerism and Contamination in Prokaryotic Genomes
|
|
keywords:
|
|
- download
|
|
- prokaryote
|
|
- assembly
|
|
- genome
|
|
- quality control
|
|
- chimeras
|
|
tools:
|
|
- gunc:
|
|
description: Python package for detection of chimerism and contamination in prokaryotic genomes.
|
|
homepage: https://grp-bork.embl-community.io/gunc/
|
|
documentation: https://grp-bork.embl-community.io/gunc/
|
|
tool_dev_url: https://github.com/grp-bork/gunc
|
|
doi: "10.1186/s13059-021-02393-0"
|
|
licence: ["GNU General Public v3 or later (GPL v3+)"]
|
|
|
|
input:
|
|
- db_name:
|
|
type: string
|
|
description: "Which database to download. Options: progenomes or gtdb"
|
|
pattern: "progenomes|gtdb"
|
|
|
|
output:
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- db:
|
|
type: file
|
|
description: GUNC database file
|
|
pattern: "*.dmnd"
|
|
|
|
authors:
|
|
- "@jfy133"
|