mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
8e5eaf1fa4
* update plink2/vcf to output zstandard compressed data automatically * update meta * set plink CPU and memory usage Co-authored-by: Sateesh <33637490+sateeshperi@users.noreply.github.com>
52 lines
1.3 KiB
YAML
52 lines
1.3 KiB
YAML
name: plink2_vcf
|
|
description: Import variant genetic data using plink2
|
|
keywords:
|
|
- plink2
|
|
- import
|
|
tools:
|
|
- plink2:
|
|
description: |
|
|
Whole genome association analysis toolset, designed to perform a range
|
|
of basic, large-scale analyses in a computationally efficient manner
|
|
homepage: http://www.cog-genomics.org/plink/2.0/
|
|
documentation: http://www.cog-genomics.org/plink/2.0/general_usage
|
|
tool_dev_url: None
|
|
doi: ""
|
|
licence: ["GPL v3"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- vcf:
|
|
type: file
|
|
description: Variant calling file (vcf)
|
|
pattern: "*.{vcf}, *.{vcf.gz}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- pgen:
|
|
type: file
|
|
description: PLINK 2 binary genotype table
|
|
pattern: "*.{pgen}"
|
|
- psam:
|
|
type: file
|
|
description: PLINK 2 sample information file
|
|
pattern: "*.{psam}"
|
|
- pvar:
|
|
type: file
|
|
description: PLINK 2 variant information file
|
|
pattern: "*.{pvar.zst}"
|
|
|
|
authors:
|
|
- "@nebfield"
|