mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
48 lines
1.3 KiB
YAML
48 lines
1.3 KiB
YAML
name: rseqc_tin
|
|
description: Calculte TIN (transcript integrity number) from RNA-seq reads
|
|
keywords:
|
|
- rnaseq
|
|
- transcript
|
|
- integrity
|
|
tools:
|
|
- rseqc:
|
|
description: |
|
|
RSeQC package provides a number of useful modules that can comprehensively evaluate
|
|
high throughput sequence data especially RNA-seq data.
|
|
homepage: http://rseqc.sourceforge.net/
|
|
documentation: http://rseqc.sourceforge.net/
|
|
doi: 10.1093/bioinformatics/bts356
|
|
licence: ["GPL-3.0-or-later"]
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bam:
|
|
type: file
|
|
description: Input BAM file
|
|
pattern: "*.{bam}"
|
|
- bai:
|
|
type: file
|
|
description: Index for input BAM file
|
|
pattern: "*.{bai}"
|
|
- bed:
|
|
type: file
|
|
description: BED file containing the reference gene model
|
|
pattern: "*.{bed}"
|
|
output:
|
|
- txt:
|
|
type: file
|
|
description: TXT file containing tin.py results summary
|
|
pattern: "*.txt"
|
|
- xls:
|
|
type: file
|
|
description: XLS file containing tin.py results
|
|
pattern: "*.xls"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@drpatelh"
|